PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG349000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 165aa    MW: 18843.3 Da    PI: 10.3606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG349000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-1122104439
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC..................................................TTS-ST CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkas...............................................kapskKls 39 
                           hn  ErrRRdriN+++  L+ellP+++                                               +a+s++ s
  Pavir.7KG349000.2.p  22 FHNFSERRRRDRINEKLKALQELLPNCTkmlvmgkgmapvvppelqqymhyitadpsqmpplrpsgqqprpfqitQANSQRQS 104
                          59************************876777777777777777766666666666666666666666666666555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-101650IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8611873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-102149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.15E-82150No hitNo description
PfamPF000101.6E-823104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-424120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEDGSVPRRS TPPTRRSRSA EFHNFSERRR RDRINEKLKA LQELLPNCTK MLVMGKGMAP  60
VVPPELQQYM HYITADPSQM PPLRPSGQQP RPFQITQANS QRQSNVESDF LSQMQNLHPS  120
EPPQNFLRPP KLQLYTPEQR GGLASTSHNG GWIPERSSSY NFME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.317750.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG349000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826117.11e-112transcription factor PIF1-like
RefseqXP_025826118.11e-112transcription factor PIF1-like
TrEMBLA0A2S3IAI41e-111A0A2S3IAI4_9POAL; Uncharacterized protein
TrEMBLA0A2T7D0231e-111A0A2T7D023_9POAL; Uncharacterized protein
TrEMBLA0A3L6PTD71e-111A0A3L6PTD7_PANMI; Uncharacterized protein
STRINGSi011759m1e-109(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-12phytochrome interacting factor 3