PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG349300.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 172aa MW: 18928.6 Da PI: 9.8711

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG349300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165	2.8e-51	11	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+d+elv +yL++k++g ++ +vd++k+ePw+Lp ++ +++ewyfFs +d+kyatg+r+nrat+sgyWkatgk Pavir.7KG349300.3.p 11 LPPGFRFHPRDDELVLDYLCHKLSGGGggAYGGIAMVDVDLNKCEPWELPDEACVGSREWYFFSLHDRKYATGQRTNRATRSGYWKATGK 100 79********************999543333469999*******76667899**************************** PP NAM 89 dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++ + + vg++ktLvfy+grap+g+kt+Wvmhe+r+ Pavir.7KG349300.3.p 101 DRPISISgrrgggAATMVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 146 *986665444445*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-52	3	150	IPR003441	NAC domain
PROSITE profile	PS51005	48.818	11	171	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	12	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSLISMMEAR LPPGFRFHPR DDELVLDYLC HKLSGGGGGA YGGIAMVDVD LNKCEPWELP 60 DEACVGSREW YFFSLHDRKY ATGQRTNRAT RSGYWKATGK DRPISISGRR GGGAATMVGM 120 RKTLVFYQGR APRGSKTEWV MHEFRVEGPA VAVAGRPCSP PKNRTSSEKQ G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-47	8	146	12	140	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.18171	6e-34	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269\|PubMed:11114891}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG349300.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU963031	0.0	EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824710.1	2e-98	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	8e-62	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A3L6Q6J0	1e-99	A0A3L6Q6J0_PANMI; NAC domain-containing protein 21/22-like
STRING	Pavir.Ga00022.1.p	1e-117	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	4e-62	NAC domain containing protein 1

Link Out ? help Back to Top
Phytozome	Pavir.7KG349300.3.p

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]