PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG355500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 156aa    MW: 17210.3 Da    PI: 6.1196
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG355500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.31.9e-091203655
              G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                         m+  gLt++h+kSHLQkYR+
  Pavir.7KG355500.1.p  1 MNSGGLTIYHIKSHLQKYRI 20
                         8999***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-8121IPR009057Homeodomain-like
PfamPF143792.0E-235197IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MNSGGLTIYH IKSHLQKYRI AKYMPASTSE GKQEKRSAGN DAQNLDPSTG MQITEALRVQ  60
LDVQRRLHEQ LEIQRNLQLR IEAQGKKLQK MFEEQLKASR TVMEPPPEEH TVQGVGAGAF  120
AGVGEQDDED AFDDVQLLPV AGSGYSDARF PSKIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG355500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685131e-112BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds.
GenBankEU9574861e-112EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds.
GenBankKJ7268311e-112KJ726831.1 Zea mays clone pUT3371 G2-like transcription factor (GLK52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822779.11e-96probable transcription factor KAN2
RefseqXP_025822780.11e-96probable transcription factor KAN2
SwissprotQ9SJW07e-39PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2S3IBB03e-95A0A2S3IBB0_9POAL; Uncharacterized protein
TrEMBLA0A2T7D1E33e-95A0A2T7D1E3_9POAL; Uncharacterized protein
STRINGPavir.Ga00160.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.25e-42G2-like family protein