PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG375300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 431aa    MW: 47134.7 Da    PI: 6.7212
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG375300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-15298393395
                          EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk +gL+++D++v++  
  Pavir.7KG375300.1.p 298 KDLTNSDVGNIGRIVLPKKDAEPNlpvlE--DKDGLILEMDDfELPAVWKFKYRYwpNNKSRMYILE-TTGEFVKKHGLQAKDILVIY-- 382
                          789******************99988543..335557777775555*********888888888888.9*******************.. PP

                          SS.SEE..EEE CS
                   B3  86 gr.sefelvvk 95 
                          ++ +++++v +
  Pavir.7KG375300.1.p 383 KNkKSGRYVAR 393
                          44477777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-16294392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-23295405IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.9E-9296398IPR003340B3 DNA binding domain
PROSITE profilePS508638.614296398IPR003340B3 DNA binding domain
PfamPF023626.3E-12298393IPR003340B3 DNA binding domain
CDDcd100175.44E-18300391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MANAKGSSAG GPGAGHGDLG RGISHEQYQA FVASVHRTAP GAANVPQYHH HHQYPAGLIQ  60
APPMAMPVHV PVPRPSYSPQ IAVPPPEPHR AQSQPPTGRY QDYSPYGNTA SSQYTRGFAD  120
WGTHNNALMS LAHATTTFGS GSSSINSNEF HQKISSYNTH TWTTTYMPRD PYNTAYGPAT  180
MNMMLQTPSF QNNHEKDSGA GFAASSFTMP ATVVPTSPFQ LMSPKSTNYT STQIFDEPNN  240
LEDTSTVFGS GDIESENSEE PDPAPVAEIE DLKQGNGHVI NVMSTTINCQ DYRIILRKDL  300
TNSDVGNIGR IVLPKKDAEP NLPVLEDKDG LILEMDDFEL PAVWKFKYRY WPNNKSRMYI  360
LETTGEFVKK HGLQAKDILV IYKNKKSGRY VARAVKAEDI QVPQCECIKA GNLSEECGFA  420
VSPSAKKIII *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-342853922109B3 domain-containing transcription factor LEC2
6j9c_D1e-342853922109B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG375300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825471.10.0putative B3 domain-containing protein Os04g0676650
TrEMBLA0A3L6Q9280.0A0A3L6Q928_PANMI; Putative B3 domain-containing protein
STRINGPavir.Ga00232.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-36B3 family protein