PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG389100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 303aa    MW: 31425.6 Da    PI: 9.8353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG389100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.2e-07105130227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          kt+ C  +     C++Gd+C+FaH++
  Pavir.7KG389100.1.p 105 KTRMCTKYNTVEGCRFGDKCHFAHSE 130
                          8999999999999***********95 PP
2zf-CCCH40.64.2e-13268294127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ykt+lC +f ++GtC +G+rC+FaHg+
  Pavir.7KG389100.1.p 268 YKTKLCENFVKGGTCTFGERCHFAHGE 294
                          9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-73562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3243765IPR000571Zinc finger, CCCH-type
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-53862IPR000571Zinc finger, CCCH-type
PfamPF146081.54562No hitNo description
Gene3DG3DSA:4.10.1000.104.1E-13102135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61103131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-8103134IPR000571Zinc finger, CCCH-type
SMARTSM003560.26103130IPR000571Zinc finger, CCCH-type
PfamPF146080.065109128No hitNo description
Gene3DG3DSA:3.30.1370.104.5E-15171241IPR004088K Homology domain, type 1
SMARTSM003229.4E-11171241IPR004087K Homology domain
PROSITE profilePS5008414.257172236IPR004088K Homology domain, type 1
SuperFamilySSF547918.47E-15174265IPR004088K Homology domain, type 1
PfamPF000137.2E-11174237IPR004088K Homology domain, type 1
CDDcd001054.78E-14174236No hitNo description
SuperFamilySSF902292.22E-10266298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-15266298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.99267295IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8267294IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10268294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEGAAAARKR SRPETANGAA AGGKRSKETE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF  60
LHFVPGGYPA VAKMLNLGSP AVSAPARAPA DHAAVANSHP ASMGKTRMCT KYNTVEGCRF  120
GDKCHFAHSE RELGKPAYMT HEAPPMGGRF GGRPEPPPPV AMGPPAGNFG ASATAKISVD  180
ASLAGGIIGK GGVNTKQICR VTGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI  240
ATISASMPPK NPAPAGGRGG APGGRSNYKT KLCENFVKGG TCTFGERCHF AHGENEQRRG  300
AA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.60380.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG389100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822781.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-159C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A3L6PS930.0A0A3L6PS93_PANMI; Zinc finger CCCH domain-containing protein 31
STRINGPavir.J40951.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]