PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG390200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 430aa    MW: 46572.5 Da    PI: 8.0793
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG390200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.35.2e-31241295155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+   Lt++h+kSHLQkYR+
  Pavir.7KG390200.1.p 241 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSGVLTIYHIKSHLQKYRI 295
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.584238298IPR017930Myb domain
SuperFamilySSF466899.68E-17239295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28240296IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-22241296IPR006447Myb domain, plants
PfamPF002492.7E-7245294IPR001005SANT/Myb domain
PfamPF143791.0E-22326372IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MMNAKKIKLH DHHYGSPLCD PQMFPAAAAA AGLSFHPGLV SSLPQQHGGS GSWLHEEYTP  60
TPRTAPATQG SCVGADTAAF FATEHLLGMV RFDFPLGTTT LPATMTTAKT PPFIRSPEAE  120
QLYRPVGPLL HRDNSVRTYY VRPQHRDAPE APPALKLPLQ QQQEQGHALY GNGSTGRLLG  180
GEPKAHSFSP HVTANTLLPA MEAPGMQSPT ENPLSRSCSI GAPGTHTGNV VAAPGHGAPS  240
KTRIRWTQDL HERFVDCVNQ LGGADKATPK GILKLMNSGV LTIYHIKSHL QKYRIAKYMP  300
ASTSEGKQEK RATGNDAQNL DPSTGMQITE ALRVQLDVQR RLHEQLEIQR NLQLRIEAQG  360
KKLQKMFEEQ LKASRTVREP PEEQPVQSAG AAAFAGVGEQ DDEDAFDDVQ LLSVAGSGYN  420
DARFPSKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-20241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-20241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-20241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-20241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-20241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-20241298158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-20241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-20241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-20241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-20241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-20241298259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-20241298259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG390200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685131e-169BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds.
GenBankEU9574861e-169EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds.
GenBankKJ7268311e-169KJ726831.1 Zea mays clone pUT3371 G2-like transcription factor (GLK52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822779.10.0probable transcription factor KAN2
RefseqXP_025822780.10.0probable transcription factor KAN2
TrEMBLA0A2S3IBB00.0A0A2S3IBB0_9POAL; Uncharacterized protein
STRINGPavir.J05593.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-61G2-like family protein