PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG397100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 177aa MW: 19144 Da PI: 9.7949

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG397100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.3e-05	66	103	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Pavir.7KG397100.1.p 66 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKIL 103 77788899******998.....8*************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.642	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-11	64	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.23E-5	64	107	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.7E-8	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MMDRLLTDGL VSSTGFLLPS PDKFSTSLEG VGESSSIINK KKANGEHAFK KPMLQTPSPL 60 PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHETIEYI KILHDQVGAL SAPYLKNGHQ 120 VHVPQLKSSS PEKSKDSHGE ISLKGRGLCL VPISSTFAVA SEVPVDFWTP FGANFR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.11438	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG397100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068256	5e-99	BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822972.1	2e-97	transcription factor bHLH112-like
Swissprot	Q94JL3	5e-49	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A2T7D0H7	2e-96	A0A2T7D0H7_9POAL; Uncharacterized protein
STRING	Pavir.J13928.1.p	2e-95	(Panicum virgatum)
STRING	Si010139m	1e-91	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG397100.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]