PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG407400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 405aa MW: 45249.5 Da PI: 6.8135

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG407400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.8e-11	113	150	6	43
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + rr+++NReAAr+sR+RKka+i++Le+ +L + + Pavir.7KG407400.1.p 113 VLRRLAQNREAARKSRLRKKAYIQQLETSRMKLAQLEQ 150 679************************86555554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-8	108	172	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	110	154	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.05E-20	112	161	No hit	No description
Pfam	PF00170	8.8E-8	112	151	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.5E-7	112	155	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.8E-8	114	157	No hit	No description
PROSITE pattern	PS00036	0	115	130	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.2E-28	198	273	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MMELYPGYLE DHFNLHKLSI GAAASPPEYM TSAPAVQFAA APIRMGVYER PAPAPVMGMW 60 NSDPFKVDSG QATSGSTVME ADKFDTRLED VPQVALEPAR STDQETSRPP ERVLRRLAQN 120 REAARKSRLR KKAYIQQLET SRMKLAQLEQ ELQRARQQGA YANGNLGDRN LGFTGSMVPG 180 VAAFEIDYSN WVEEQNRHTA ELRSALQGQT TELELRMLVE TGLNNYEHLF RIKALAANSD 240 VFYVTSGVWK TPAERFFLWI GGFRPSEVLK ILRPQLEPLT EAQLMAVGGL QHTSTQAEDA 300 LSQGMEKLQQ NLAETLTAAA DPFGPPDGYM LQMETAVEKL KELVGFVIQA DHLRQTTLQQ 360 MHKILTTRQA ARGLLALGDY FQRLRALSHL WATRPREAPT LSHL*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MMELYPGYLE DHFNLHKLSI GAAASPPEYM TSAPAVQFAA APIRMGVYER PAPAPVMGMW  60
NSDPFKVDSG QATSGSTVME ADKFDTRLED VPQVALEPAR STDQETSRPP ERVLRRLAQN  120
REAARKSRLR KKAYIQQLET SRMKLAQLEQ ELQRARQQGA YANGNLGDRN LGFTGSMVPG  180
VAAFEIDYSN WVEEQNRHTA ELRSALQGQT TELELRMLVE TGLNNYEHLF RIKALAANSD  240
VFYVTSGVWK TPAERFFLWI GGFRPSEVLK ILRPQLEPLT EAQLMAVGGL QHTSTQAEDA  300
LSQGMEKLQQ NLAETLTAAA DPFGPPDGYM LQMETAVEKL KELVGFVIQA DHLRQTTLQQ  360
MHKILTTRQA ARGLLALGDY FQRLRALSHL WATRPREAPT LSHL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.3176	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG407400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823702.1	0.0	transcription factor TGAL6-like isoform X1
Refseq	XP_025823703.1	0.0	transcription factor TGAL6-like isoform X1
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A2T7D0I9	0.0	A0A2T7D0I9_9POAL; Uncharacterized protein
STRING	Pavir.Ga00349.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-126	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Pavir.7KG407400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]