PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG421500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 239aa    MW: 26496.1 Da    PI: 9.7503
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG421500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2090149357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R++++++q+++Le l++   r+p+  ++e+++++l    +++ ++V++WFqN++a+e++
  Pavir.7KG421500.1.p  90 TRWNPSPDQIKVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 149
                          8*****************99**************************************97 PP
2Wus_type_Homeobox114.84.3e-3789151365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          +tRW+P+p+Qik+Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq
  Pavir.7KG421500.1.p  89 TTRWNPSPDQIKVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 151
                          79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.97785150IPR001356Homeobox domain
SMARTSM003891.6E-787154IPR001356Homeobox domain
SuperFamilySSF466891.05E-1288155IPR009057Homeodomain-like
CDDcd000862.21E-590151No hitNo description
PfamPF000461.2E-1790149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-890149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRLHHFHGVA YFDKPASPSP SSSPPSISSS SLSSSAATPL CAFHCLRPLA PKISFPEARK  60
MVVLPEFARV RNAARLLHCT LLQVPASGTT RWNPSPDQIK VLEMLYRGGM RTPNSFQIEQ  120
ITEELGKYGR IEGKNVFYWF QNHKARERQK QKRAALLTLS TTTTLSSLPA AETKDGLRKE  180
EASSEDASSR KRRRCRTWGD DDVHGDVTTT PTTTEVVADC TDDVTLELFP LRPQGKAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG421500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851951e-112BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds.
GenBankEU9642751e-112EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823101.11e-112WUSCHEL-related homeobox 4-like isoform X2
SwissprotQ25AM24e-94WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV34e-94WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A3L6Q5Y11e-114A0A3L6Q5Y1_PANMI; WUSCHEL-related homeobox 4
STRINGPavir.Ga00299.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.13e-39WUSCHEL related homeobox 4