PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG021100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 118aa    MW: 13124.1 Da    PI: 8.4956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG021100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.4e-1622105185
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          ++k+++++ + +s  l+l   f+++ g+ +++++tl+   +s rsW+v+    k+s++yv +  Wk+F+++n++k+gD++++  +
  Pavir.7NG021100.1.p  22 WIKKEINHKSIASY-LSLTPAFCNAVGLREPCTITLKTSMSSTRSWQVRAVPYKNSSHYVGGLDWKRFCEENEIKVGDVCTINIV 105
                          67899999999987.**************99988888888999*******8899999************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.91121117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-1322114IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1224106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-1525114IPR015300DNA-binding pseudobarrel domain
CDDcd100177.14E-1129102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MTSVNKAAPN TRCVFEIGPP AWIKKEINHK SIASYLSLTP AFCNAVGLRE PCTITLKTSM  60
SSTRSWQVRA VPYKNSSHYV GGLDWKRFCE ENEIKVGDVC TINIVETTLW HVDVAHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG021100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975298.18e-46putative B3 domain-containing protein Os04g0347400 isoform X2
RefseqXP_022684230.12e-46putative B3 domain-containing protein Os04g0346900
RefseqXP_025808159.11e-45putative B3 domain-containing protein Os04g0347400 isoform X1
RefseqXP_025808161.11e-45putative B3 domain-containing protein Os04g0347400 isoform X2
RefseqXP_025808162.11e-45putative B3 domain-containing protein Os04g0347400 isoform X3
TrEMBLA0A3L6QA985e-75A0A3L6QA98_PANMI; Uncharacterized protein
STRINGPavir.Gb02308.1.p2e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187