PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG021400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 117aa    MW: 13062.1 Da    PI: 8.9511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG021400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.7e-1726105586
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +++ ++ +++ l+lp +f+++ g+ +++++tl+  ++s  sW+v+l   +++s   v ++GWk+F+ +ng+k+gD+++++ ++
  Pavir.7NG021400.1.p  26 EINTNTIEHN-LSLPLSFCKALGLREPCTVTLKTPTSSTSSWQVRLVPyTNHS--QVDGSGWKGFCYENGIKVGDVCTIQIIE 105
                          5566666666.**************99977777777777*******3324444..6799********************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-1818115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54721116IPR003340B3 DNA binding domain
SMARTSM010191.0E-423116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-1824115IPR015300DNA-binding pseudobarrel domain
PfamPF023629.3E-1530106IPR003340B3 DNA binding domain
CDDcd100174.73E-1332107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MVSLNKASYR KYSVFEIGPP AWIMKEINTN TIEHNLSLPL SFCKALGLRE PCTVTLKTPT  60
SSTSSWQVRL VPYTNHSQVD GSGWKGFCYE NGIKVGDVCT IQIIETTLWH VTIARR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG021400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.14e-43putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0A9VPG11e-52A0A0A9VPG1_ARUDO; Uncharacterized protein
STRINGPavir.Gb02050.1.p1e-44(Panicum virgatum)
STRINGPavir.Gb02308.1.p4e-45(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.15e-06B3 family protein