PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG026500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 168aa    MW: 19020.9 Da    PI: 10.7023
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG026500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.6e-1150126177
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esg...rsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                          ++k++++ ++ +++ ++lp +f++ +g+ k++   +tl++ +s+    sW  +l +  + ++ ++++GW++F+ +n++++g
  Pavir.7NG026500.1.p  50 WIKKEMNDSTIERQ-FCLPLSFCKVNGLRKPCM--ITLKTsPSSastSSWLARL-HPYQNCSQLIGSGWNRFCYENKIRVG 126
                          67888888888886.**************8885..666653444788*******.444445579***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-1048127IPR015300DNA-binding pseudobarrel domain
PfamPF023625.4E-852127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-1053127IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSAQFKIRLS GRARAKGQVI KNKRDKKSTR PLNEESSKTK CVFGIGPPAW IKKEMNDSTI  60
ERQFCLPLSF CKVNGLRKPC MITLKTSPSS ASTSSWLARL HPYQNCSQLI GSGWNRFCYE  120
NKIRVGQWRS HPSRRLDFFA SSASGVGDVC TFEIVETTQW DVIIERR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG026500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.11e-35putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6Q4J98e-61A0A3L6Q4J9_PANMI; Uncharacterized protein
STRINGPavir.J27932.1.p4e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187