PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG055200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 213aa    MW: 23863.5 Da    PI: 10.2791
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG055200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-163377248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g ++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Pavir.7NG055200.1.p 33 GHMSPQEERLIIELHARWGKR-WSRIARRLP-GRTDNEIKNYWRTHM 77
                         5689*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4261226IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-91239IPR009057Homeodomain-like
SuperFamilySSF466896.27E-221285IPR009057Homeodomain-like
PROSITE profilePS5129425.8442781IPR017930Myb domain
SMARTSM007171.0E-153179IPR001005SANT/Myb domain
PfamPF002494.4E-153376IPR001005SANT/Myb domain
CDDcd001673.16E-123577No hitNo description
Gene3DG3DSA:1.10.10.603.7E-204078IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDRAGGHATG LNRTGKSCRL RWVNYLHPGL KHGHMSPQEE RLIIELHARW GKRWSRIARR  60
LPGRTDNEIK NYWRTHMRKK AQERKMNMSP SSSSSSLTYL SCLLDTAPII GMGSGDNHNG  120
SCVTSTLEST QSVMDGYPMD QIWREIEIPQ APALLGIAEG KDKVCSSIPA LCHHLLFGIT  180
NALRYSGRWK MKKSGCWLHN LVMVNKALAI EG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-17138137105C-Myb DNA-Binding Domain
1msf_C4e-17138137105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG055200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6524630.0EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBankHM1367810.0HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds.
GenBankKM3874100.0KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.
GenBankKM3874110.0KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980031.11e-95myb-related protein MYBAS1
SwissprotQ53NK62e-85MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLK3ZJP93e-94K3ZJP9_SETIT; Uncharacterized protein
STRINGPavir.Gb02200.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.34e-52myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]