PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG055200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 132aa    MW: 14835.9 Da    PI: 9.2128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG055200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-16243548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Pavir.7NG055200.2.p  2 SPQEERLIIELHARWGKR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                         89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.727147IPR017930Myb domain
CDDcd001672.02E-12143No hitNo description
SMARTSM007172.0E-11145IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-13248IPR009057Homeodomain-like
PfamPF002495.0E-15242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-20244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSPQEERLII ELHARWGKRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMNMSPSSSS  60
SSLTYLSCLL DTAPIIGMGS GDNHNGSCVT STLESTQSVM DGYPMDQIWR EIEIPQAPAL  120
LGIAEGKDKT T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG055200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649791e-116EU964979.1 Zea mays clone 282909 MYB59 mRNA, complete cds.
GenBankKJ7278981e-116KJ727898.1 Zea mays clone pUT5992 MYB transcription factor (MYB88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149882.16e-73MYB59
SwissprotQ53NK63e-63MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A3L6EYF51e-71A0A3L6EYF5_MAIZE; Myb-related protein MYBAS1
TrEMBLB6TJ141e-71B6TJ14_MAIZE; MYB59
TrEMBLK3ZK152e-72K3ZK15_SETIT; Uncharacterized protein
TrEMBLK7TQE61e-71K7TQE6_MAIZE; MYB transcription factor
TrEMBLK7UNQ82e-72K7UNQ8_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGPavir.Gb02200.1.p4e-90(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.13e-31myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]