PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG057600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 253aa    MW: 27124.3 Da    PI: 4.5576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG057600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08148187650
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 
                             Er+RR r+++++ eLr+l+P+      +K++Ka+i   Av Y
  Pavir.7NG057600.1.p 148 IVSERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVY 187
                          568*********************7.....6*********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-11135187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.57E-11139187No hitNo description
Gene3DG3DSA:4.10.280.101.5E-10140187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.497142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-6148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6148187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDMVEHQLLH FSPQEHFMTS PGFFAVDGGH PAHFQTGGFV VEPVGVAAGI EDGGWVEDLI  60
QLGDELFGGG DVIAVGTGDH KPWQFDDDNG GSPDDPPPSV SVDGDGSPPS VEQGAGDGVL  120
ASEPHRDRED GDDASPATRK RRDRSKTIVS ERKRRVRMKE KLYELRSLVP NITKMDKASI  180
IADAVVYSLA CFRVESSSLV RSGPDRLVST LTLKVSEQVG DATICEASVK LWVIAALLKE  240
GFRPEATVEI SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139154KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG057600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269727e-59KJ726972.1 Zea mays clone pUT3673 bHLH transcription factor (bHLH100) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.14e-86transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3L6Q9905e-89A0A3L6Q990_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGPavir.J29678.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-21FER-like regulator of iron uptake