PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG061200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SBP

Protein Properties

Length: 256aa MW: 28571 Da PI: 10.8789

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG061200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	50	8e-16	161	204	4	48
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 v+gC +dls+ak yh +hkvC++h+k+p vlv+ +eq fCqqC r Pavir.7NG061200.1.p 161 VPGC-VDLSSAKPYHCHHKVCSMHTKTPRVLVASIEQPFCQQCMR 204 7778.7*************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.896	156	232	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	5.2E-13	160	204	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-14	161	204	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-10	161	204	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MVNGDSYPLP SHYPDGGGAA PFRPSLRRPL RRRFYLRLRT RPRLNAPELR LHLRPRPPPR 60 LRCPFPAVPS RIQVERWPAW PGWIYGGGSR GEGGSTAAVA VTCPDYGRRP RVLAARWAGV 120 MRTDFAYICA ESGPSGGCIG RQEGKGSGHR WRPVPRRAAM VPGCVDLSSA KPYHCHHKVC 180 SMHTKTPRVL VASIEQPFCQ QCMRKEGSEG LRMTAKKMRR VVYVLDGDDV NISPYNLRVP 240 YYQWLNGFAA DPQAA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG061200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-11	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Pavir.7NG061200.1.p