PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG063000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 211aa    MW: 23800 Da    PI: 7.2018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG063000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.28.6e-16461891128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                          lp+G+rF+P d  l++  L ++++gk+          ++e+i+   ++ +++P++Lp  vk + ++++fF++ +++y  g++++ +    
  Pavir.7NG063000.1.p  46 LPAGVRFDPLDLKLLNLELLQHLQGKSslpnsnsrALIDEFIRYGgNVQYTHPRNLP-GVKMDGSSLHFFHTVSNTYGCGHHEQHKisns 134
                          799************99999999998887665443222235665568**********.6667889*************999888764566 PP

                  NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               ++ +W++ g++k +++++g ++g kk       +  + +   Wvmh+y+l
  Pavir.7NG063000.1.p 135 ddvsDEHIRWHKIGRSKVICEENGVEKGWKKGRGSSARSGGNVHGHCWVMHQYHL 189
                          665544778**********************9999877777878899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-2040208IPR003441NAC domain
PROSITE profilePS5100519.25446208IPR003441NAC domain
PfamPF023653.7E-547189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTWVGLVKRI RNATHLISLR LGEFIVDPYI NCPNCECGID TMWPALPAGV RFDPLDLKLL  60
NLELLQHLQG KSSLPNSNSR ALIDEFIRYG GNVQYTHPRN LPGVKMDGSS LHFFHTVSNT  120
YGCGHHEQHK ISNSDDVSDE HIRWHKIGRS KVICEENGVE KGWKKGRGSS ARSGGNVHGH  180
CWVMHQYHLG LDEDEMDGEF VISKLFYQLP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG063000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824946.13e-94SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3
RefseqXP_025824947.13e-94SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3
RefseqXP_025824948.13e-94SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3
RefseqXP_025824949.13e-94SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X3
TrEMBLA0A3L6PYT45e-93A0A3L6PYT4_PANMI; NAC domain-containing protein 8-like
STRINGPavir.Gb02281.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-35NAC family protein