PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG072300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 440aa    MW: 45448.9 Da    PI: 7.217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG072300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05107128223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +Cp Cgk F++  ++  H+r+H
  Pavir.7NG072300.1.p 107 ECPECGKFFKNDKSMFGHLRSH 128
                          6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.014106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408106133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-7107128No hitNo description
PfamPF139120.0039107129IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-7296323No hitNo description
SMARTSM003551.4301324IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827301328IPR007087Zinc finger, C2H2
PfamPF139121.6E-5301325IPR007087Zinc finger, C2H2
PROSITE patternPS000280303324IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSRGSLLCSV PLLQVCVAQL SLIPAGSHLT GIRIGGGGLP DEFDGHSADS IFDDDQGADT  60
GDEHASIDGG GGAGDEEEEG SLPPHGGGGG GGGAKDSSRS GSGGDVECPE CGKFFKNDKS  120
MFGHLRSHPN KGYKGATPPV SKLKLSPDMA AAASSSSAAS SSSSSRPGTD RPPARHSGGD  180
PRQTSLETLC AAYAILALSL RYRGSSQGTQ APPPPSFEEV DATGAQGGAG GSVTGNAAAE  240
LKCNAGAEAG NQLGNPHEHG DSSVEIPKKR RSRNMPTKEV ARVAHRKKAK LVPSPKERRP  300
YQCKHCTAEF ATNQALGGHA AGHHREKKVP TRLSGPSGVT AGSQNGKRKV EDEEDYDDMD  360
LSRRRGRPVS VEISMARDVP WQSGQQAAGR QVRQHSEKRN DGRPPAAAVA ATPTAASADD  420
GGGRRLWNID LNVEAPEQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG072300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.11e-134uncharacterized protein LOC112890871
TrEMBLA0A3L6PW681e-163A0A3L6PW68_PANMI; Uncharacterized protein
STRINGPavir.Gb02113.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028