PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG075400.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 343aa    MW: 39220 Da    PI: 8.531
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG075400.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.8e-13159246293
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          +k+ + s  ++ + l l   f+++ g+++++  +++l+++      W+v+   r ++++ ++l +GW++F ++n Lkeg +++F +++++
  Pavir.7NG075400.5.p 159 IKKVIDSRIHEYN-LPLATAFCDAVGLQEPC--MIMLKTSMDslGCWQVRG--RPGKNSsFMLVQGWRRFYHENCLKEGNMCTFNVVETT 243
                          6777777777776.9999**********888..5676665555699*****..6666666*************************76643 PP

                          EE..E CS
                   B3  89 efelv 93 
                          +   +
  Pavir.7NG075400.5.p 244 QW--H 246
                          33..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.67171IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-10773IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-8973IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15152252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-15153251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-6159237No hitNo description
PfamPF023622.8E-9170245IPR003340B3 DNA binding domain
PROSITE profilePS5086310.052202253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPREDWKNRT AVVFGPLGKI CEIDLRMDQS DMFFAGGWSQ FLALHGITEA NCLLLRYDGN  60
MTFTAKVFEP NGCQRESKYN NIGLQKISTL QDKEKQQEVP CGEEQERLVR YQACIHTCQR  120
NNDWPCREGP KKPKAPMNSS NQAPLPKRSL YEIGPPSWIK KVIDSRIHEY NLPLATAFCD  180
AVGLQEPCMI MLKTSMDSLG CWQVRGRPGK NSSFMLVQGW RRFYHENCLK EGNMCTFNVV  240
ETTQWHVVIT RCKEKINQFN YQETPSASSI KHKRDNNMST SEEQKDPKSP MTSLNKASSS  300
NRSIFEIGPP AWIRKEINIY TIQNVFVSTI IFLLICAKQE VG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG075400.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9RFZ71e-106A0A0A9RFZ7_ARUDO; Uncharacterized protein
TrEMBLA0A0A9S1931e-106A0A0A9S193_ARUDO; Uncharacterized protein
STRINGPavir.Gb02051.1.p0.0(Panicum virgatum)