PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG075500.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 547aa    MW: 60507.9 Da    PI: 9.3737
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG075500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75e-19305389187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+ ++ ++lks+ l+l k+f++++g+  ++   ++l++   s +sW+v    r + ++ yv++ GWk+F+++n LkegD+++F+++g+
  Pavir.7NG075500.4.p 305 WIKKVINTSTLKSH-LSLAKDFCNAIGLRGPC--VIRLKTsmDSTESWQVHG--RTSENSsYVISHGWKRFCQENSLKEGDMCTFYVVGT 389
                          78999********9.***********999666..56666622666*******..5554445*************************8763 PP
2B356.17e-18452537191
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ++k++++ +++k+   +lp  f+e++g+ +++++tl+   +sg sW+ ++   k+ + ++ ++GWk+F+++n++kegD+++F +++   +
  Pavir.7NG075500.4.p 452 WVKKEINTSTMKHV-HSLPLAFCEAIGLREPCTITLKTSMSSGTSWQTRVVPYKY-CNHLGGSGWKKFCQENRIKEGDVCTFNVVE---T 536
                          67889899999885.8*************99999999888**********54555.57899*********************9654...3 PP

                          . CS
                   B3  91 e 91 
                          +
  Pavir.7NG075500.4.p 537 K 537
                          3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.78115108IPR003340B3 DNA binding domain
SMARTSM010191.318108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-924110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-828109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-15129231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-16131231IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.769133229IPR003340B3 DNA binding domain
CDDcd100176.15E-9134226No hitNo description
SMARTSM010194.9E-4136229IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-18300399IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-18302398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407304400IPR003340B3 DNA binding domain
PfamPF023627.4E-15305395IPR003340B3 DNA binding domain
CDDcd100172.94E-12306390No hitNo description
SMARTSM010197.7E-8306400IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-17448545IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0052453546IPR003340B3 DNA binding domain
PfamPF023623.4E-15453543IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-17455545IPR015300DNA-binding pseudobarrel domain
CDDcd100176.61E-12467531No hitNo description
PROSITE profilePS5086311.603468546IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSPGIPSCGN RGASGRKHLR VLLPFTCNSL RIPDELAAEI GAEEAFVVAP FGGKGRLRRV  60
EVGLDGDGAF LGRGWPEFAG ACGVARGWFL VLRHHGGGLL TVKAFDSCCC LRELATRSPA  120
VEEPMSSTDA SRRPQFISVL APDSMEKLLI PAKFVQNYMS KGLMNNCMAV LFGPFGKICQ  180
VELKINGPDN FLSGGWSQFL ALHGITETHC LLLRYEGNMA FTVKVFGPDG CQIKSKHNGV  240
RMQQISTVLN MEKQQELPSA SIQKCERKKD QLCSEERKKR KASMTSLEKA PLQKKSFYEI  300
GPPSWIKKVI NTSTLKSHLS LAKDFCNAIG LRGPCVIRLK TSMDSTESWQ VHGRTSENSS  360
YVISHGWKRF CQENSLKEGD MCTFYVVGTT LWHVVIMRCK EKQETPSAAS SKSKTDNYIS  420
SEEQKRPNGP MTSSNKASSK TICAFEIGPP AWVKKEINTS TMKHVHSLPL AFCEAIGLRE  480
PCTITLKTSM SSGTSWQTRV VPYKYCNHLG GSGWKKFCQE NRIKEGDVCT FNVVETKLWH  540
VVIARQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266280RKKDQLCSEERKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG075500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825039.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A0A9S1930.0A0A0A9S193_ARUDO; Uncharacterized protein
STRINGPavir.Gb02050.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.12e-15B3 family protein