PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG075500.8.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 301aa    MW: 33851.5 Da    PI: 10.1554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG075500.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.8e-19181265187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+ ++ ++lks+ l+l k+f++++g+  ++   ++l++   s +sW+v    r + ++ yv++ GWk+F+++n LkegD+++F+++g+
  Pavir.7NG075500.8.p 181 WIKKVINTSTLKSH-LSLAKDFCNAIGLRGPC--VIRLKTsmDSTESWQVHG--RTSENSsYVISHGWKRFCQENSLKEGDMCTFYVVGT 265
                          78999********9.***********999666..56666622666*******..5554445*************************8763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-155107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-177107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.7699105IPR003340B3 DNA binding domain
CDDcd100174.10E-910102No hitNo description
SMARTSM010194.9E-412105IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-19176275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-19178274IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.407180276IPR003340B3 DNA binding domain
PfamPF023622.6E-15181271IPR003340B3 DNA binding domain
CDDcd100171.44E-12182266No hitNo description
SMARTSM010197.7E-8182276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSSTDASRRP QFISVLAPDS MEKLLIPAKF VQNYMSKGLM NNCMAVLFGP FGKICQVELK  60
INGPDNFLSG GWSQFLALHG ITETHCLLLR YEGNMAFTVK VFGPDGCQIK SKHNGVRMQQ  120
ISTVLNMEKQ QELPSASIQK CERKKDQLCS EERKKRKASM TSLEKAPLQK KSFYEIGPPS  180
WIKKVINTST LKSHLSLAKD FCNAIGLRGP CVIRLKTSMD STESWQVHGR TSENSSYVIS  240
HGWKRFCQEN SLKEGDMCTF YVVGTTLWHV VIMRCKEKPV AKARLTTIFQ VKNKRGQMAP  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142156RKKDQLCSEERKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG075500.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975298.11e-98putative B3 domain-containing protein Os04g0347400 isoform X2
TrEMBLA0A0A8XMY61e-114A0A0A8XMY6_ARUDO; Uncharacterized protein
TrEMBLA0A0A9RFZ71e-113A0A0A9RFZ7_ARUDO; Uncharacterized protein
STRINGPavir.Gb02050.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.14e-13B3 family protein