PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG075900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 613aa    MW: 68453 Da    PI: 9.3184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG075900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.3e-133253921886
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          l  +f++++g+ +++ +tl+    s +sW+v     +k ++y+l++GW  F+k+n+L egD+ +F  ++
  Pavir.7NG075900.2.p 325 LATSFCDAIGLREPCMITLKTSMISTESWQVCGL-PRKNKSYMLKQGWTTFCKENNLMEGDIGTFNIIE 392
                          7789********999988888889*******994.555568************************9765 PP
2B346.37.4e-15517602287
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          +k+ ++ ++ +++ ++lp +f++ +g+ k++   +tl++ +s+    sW  +l +  + ++ ++++GW++F+ +n++++gD+++F+ +++
  Pavir.7NG075900.2.p 517 IKKAMNDSTIERQ-FCLPLSFCNVNGLRKPCM--ITLKTsPSSastSSWLARL-HPYQNCSQLIGSGWNRFCYENKIRVGDVCTFEIIET 602
                          6777777777775.********999***8885..666653444788*******.444445579***********************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.5714103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-724105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-624105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.6465103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-13126225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-12126225IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.418127223IPR003340B3 DNA binding domain
SMARTSM010190.003130223IPR003340B3 DNA binding domain
SMARTSM010191.2314404IPR003340B3 DNA binding domain
CDDcd100171.24E-6316388No hitNo description
SuperFamilySSF1019364.71E-12324404IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-9325399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-13325402IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.968341404IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-16513611IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.194515612IPR003340B3 DNA binding domain
SMARTSM010190.015517608IPR003340B3 DNA binding domain
CDDcd100171.12E-8517611No hitNo description
Gene3DG3DSA:2.40.330.106.3E-16519610IPR015300DNA-binding pseudobarrel domain
PfamPF023626.1E-12520602IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MASSGGRGAA ARKHLRVLLP FICDSLRIPD ELAQEIGAGE AHVVGPPASG KEVWPEVGWD  60
GDGAFLGRGW PEFADACGVE GGWLLVVRHH GRGLLTVKAF DRSCCLREIG APPAVSAIPS  120
GKGSLHKPQF ISVLPPKSLE KMLIPTKFVE QCISKENLNS YMTVVLRPPG KIGQIELKMD  180
QSDLFLTGGW PQFLASHGIT DANALLLKYE GNMVCTVKVF EHDGCQRGSR NKDIRMEQDM  240
EEQPSACTQR CGRDRGKNPK GPMTRLNKAT LLKKSVYEIG NGSPSWIKKQ INANTLTVCL  300
VGWWSPIRME PTPFYDVWMR VREALATSFC DAIGLREPCM ITLKTSMIST ESWQVCGLPR  360
KNKSYMLKQG WTTFCKENNL MEGDIGTFNI IETTLWHVII TRYKEEMINQ LFYESISASN  420
QKRKSENDKS SSEEKMRPKR SMASLNKASL KTSALEMGPP AWIKGINGSS IQNQIWKSKS  480
QRSGNKEQMR QKIYKTSLNE ESSKTKCAFG IGPPAWIKKA MNDSTIERQF CLPLSFCNVN  540
GLRKPCMITL KTSPSSASTS SWLARLHPYQ NCSQLIGSGW NRFCYENKIR VGDVCTFEII  600
ETTQWDVSIE RR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG075900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825040.11e-179putative B3 domain-containing protein Os04g0347400 isoform X2
TrEMBLA0A3L6Q4J90.0A0A3L6Q4J9_PANMI; Uncharacterized protein
STRINGPavir.J30364.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-07B3 family protein