PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG076000.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 386aa    MW: 44074.9 Da    PI: 10.107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG076000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-114831698
                         EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         + +p kf+++h   +  ++++ + ++  ++g+++++kl  + +++ +++t+GW++F   +++ e   ++ +++g++ f  +vkvf 
  Pavir.7NG076000.4.p  4 MPIPAKFLQQHipkE--HQNNCMAIVLGPHGKVYNIKL--ETYRSDMFFTGGWSQFMVFHDITESNALLVRYEGNMVF--TVKVFG 83
                         779********9643..445668999************..999999********************************..898886 PP
2B360.62.8e-19142226186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+ ++ ++l+++ l l k f++++g++k++++tl+    +g +sW v    +k+s +y+l +GW++F+++n+LkegD+++F +++
  Pavir.7NG076000.4.p 142 WIKKQINTNTLEKH-LALAKAFCDAIGLQKPCTITLRTSRADGtKSWLVHGLTCKTS-SYLLVQGWRQFCQENHLKEGDTCTFNVIE 226
                          67888999999999.**************999777776666669*******666665.79***********************9765 PP
3B348.81.3e-15287369186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+++++++ +++ l lp +f++++g  +++ +tl+  ++s +sW+  l+  ++ g+  l +GWk+F+ +ng+++gD+++ + ++
  Pavir.7NG076000.4.p 287 WVKKEINASTIENH-LNLPLPFCKAIGFRQRCMITLKTSTSSTKSWQACLNLYQNCGQ--LVGGWKSFCLDNGIRVGDVCTMEIIE 369
                          78999********9.***********99999999999999999*******88888877..789******************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.87185IPR003340B3 DNA binding domain
SMARTSM010190.003185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13385IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-7382IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14385IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-10382No hitNo description
SuperFamilySSF1019362.75E-17136237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-19137237IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66141238IPR003340B3 DNA binding domain
SMARTSM010191.2E-6143238IPR003340B3 DNA binding domain
PfamPF023626.6E-15144226IPR003340B3 DNA binding domain
CDDcd100171.06E-9153222No hitNo description
SuperFamilySSF1019363.92E-16284380IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.292286381IPR003340B3 DNA binding domain
PfamPF023625.2E-12287369IPR003340B3 DNA binding domain
SMARTSM010192.4E-4288381IPR003340B3 DNA binding domain
CDDcd100174.31E-10289371No hitNo description
Gene3DG3DSA:2.40.330.107.4E-16290380IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEKMPIPAKF LQQHIPKEHQ NNCMAIVLGP HGKVYNIKLE TYRSDMFFTG GWSQFMVFHD  60
ITESNALLVR YEGNMVFTVK VFGTDGIPRD SKQKENRAQQ RSTLPHSEKL QKAPSVSIQK  120
HKRKNKTSLG RNSIYKIGPP SWIKKQINTN TLEKHLALAK AFCDAIGLQK PCTITLRTSR  180
ADGTKSWLVH GLTCKTSSYL LVQGWRQFCQ ENHLKEGDTC TFNVIETTLW NVLITRHEEK  240
MNQFCYETPK SKKNKSNTDG QKMLQGSMNY LNKSRTKSVF EIGPPAWVKK EINASTIENH  300
LNLPLPFCKA IGFRQRCMIT LKTSTSSTKS WQACLNLYQN CGQLVGGWKS FCLDNGIRVG  360
DVCTMEIIET TLWNVTVDRR EDRTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG076000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6QA510.0A0A3L6QA51_PANMI; Putative B3 domain-containing protein
STRINGPavir.J24325.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-16B3 family protein