PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG076100.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 632aa    MW: 72679.7 Da    PI: 10.4573
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG076100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.2e-17230314187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+++++++lk+  l l+  f+ ++g+++++++tl+   +s +sW+v      k+g+y l++GW +F+k+n Lk gD+++F ++++
  Pavir.7NG076100.3.p 230 WIKKEINANSLKRE-LALSAAFCGAIGLPEHCTITLKTSMSSTESWQVLA-LPSKKGSYQLRNGWMRFCKENSLKIGDICTFNVIET 314
                          789999******98.**************99988888888999*****99.4666677*************************8765 PP
2B357.91.8e-18384468186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+ +++++l++  l l  +f++++g+ + + +tl+ +  s  sW+v+ i  k+ ++y+l kGW++F+++n Lk gD+++F +++
  Pavir.7NG076100.3.p 384 WIKKVINAHTLEKY-LALATSFCDAIGLRESCMITLKTTMDSTISWQVRGISIKNCRSYLLIKGWRRFCQENSLKKGDICTFNVIE 468
                          68999999999997.**************99988888888899***************************************9765 PP
3B348.51.5e-15539620286
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +k++++  + k+ rl+lp  f++++g+ +++++tl+   +s  sW+ ++   ++s+++v  +G ++F+++ng+k+gD+++Fk ++
  Pavir.7NG076100.3.p 539 IKKEINMWAIKN-RLYLPPVFCKAIGIREPCKITLKTSMSSTTSWQARVVPYNRSSHHV--SGLQRFCRDNGIKVGDVCTFKIVD 620
                          677777777776.6**************99998888888999*******6666666655..8********************654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577127No hitNo description
PROSITE profilePS508638.57260155IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-1162156IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.002463155IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-1263155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16226324IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-17227323IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-4231327IPR003340B3 DNA binding domain
PfamPF023626.6E-13231314IPR003340B3 DNA binding domain
CDDcd100177.08E-9236309No hitNo description
PROSITE profilePS5086310.856261325IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-18379480IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-19380478IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.364383480IPR003340B3 DNA binding domain
SMARTSM010199.6E-7385480IPR003340B3 DNA binding domain
CDDcd100172.32E-10385464No hitNo description
PfamPF023622.0E-14385469IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15535628IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0021539631IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14548628IPR015300DNA-binding pseudobarrel domain
CDDcd100177.85E-10548617No hitNo description
PfamPF023625.0E-13548628IPR003340B3 DNA binding domain
PROSITE profilePS508639.093550631IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MRVKKLFTRR GVYWMLANFY SSSLLGCYQF MITRIQSKVI VCNSFCSVEA TTGSQDTARK  60
LQFLRVLPKD FREKMLIPAK IVQYIPKEHL DYRKAIVSGP LGKVSPIELE MNQSGVFFRG  120
GWSQFLVLHG ITEDNSLLLR YEGNMMFTVK VFEADGHQRE SKHKDIGTQQ VSTLPDIRER  180
QEESSVSIQK RCNSNWLNNG GQKMQKGPIT RLKKAPLWRK SVFKIGPPSW IKKEINANSL  240
KRELALSAAF CGAIGLPEHC TITLKTSMSS TESWQVLALP SKKGSYQLRN GWMRFCKENS  300
LKIGDICTFN VIETTMWHVV VTRCKEKMNQ LCYQEYPSIS SRMHMSKSKW PRSRRNKRSN  360
GSRSFLNKTA FHRKSFYEIG PPSWIKKVIN AHTLEKYLAL ATSFCDAIGL RESCMITLKT  420
TMDSTISWQV RGISIKNCRS YLLIKGWRRF CQENSLKKGD ICTFNVIETT VWHVIITRYK  480
EKIDQPCYEK PSASSMKRKR EDDRSISEEQ KRPKGSMTSW CKASSKTGCI FEIGPPAWIK  540
KEINMWAIKN RLYLPPVFCK AIGIREPCKI TLKTSMSSTT SWQARVVPYN RSSHHVSGLQ  600
RFCRDNGIKV GDVCTFKIVD TTLWHVIIEP R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.289721e-84callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG076100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826051.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6PW370.0A0A3L6PW37_PANMI; Uncharacterized protein
STRINGPavir.J14658.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-13B3 family protein