PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG079300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 254aa    MW: 28902.8 Da    PI: 5.4551
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG079300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.87.3e-1179127353
              G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                           l W p L ++F+ a+e LG  e AtP +i+ +m+v+++ ++++  HLQk+
  Pavir.7NG079300.1.p  79 HLMWIPFLQKKFLYALELLG--EAATPGKIKLIMNVNSIGRKQISAHLQKH 127
                          689****************4..67*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-975131IPR009057Homeodomain-like
SuperFamilySSF466898.24E-578133IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-1180128IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMSVDLTWST MKRSVELGAR FLVKKPLDGN TINNIWQHLD LKFYWWEKIE YLFQGIEAKT  60
DDVFESENKF IEGKKKVAHL MWIPFLQKKF LYALELLGEA ATPGKIKLIM NVNSIGRKQI  120
SAHLQKHLKK VEKELRNTDA KKCKNDPEIH PTNISDEEMS WDETAGNTQE TQGKTMYEAM  180
RGALQLGTVF DESQLPNDPF GRQARKGEVD ITGDGYGRDD WTCDSYKPVA NGDAQAQVVK  240
LVTYSDSEDG EAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG079300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825246.11e-160two-component response regulator ORR29-like
TrEMBLA0A2T8IBS71e-159A0A2T8IBS7_9POAL; Uncharacterized protein
STRINGPavir.Ga02356.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.16e-08GOLDEN2-like 2