PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG081000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 174aa MW: 19383.7 Da PI: 4.9244

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG081000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	32.5	2e-10	2	47	6	53
G2-like 6 WtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 W p L ++F+ a+e LG e AtP +i+ +m+v+++ ++++ HLQk+ Pavir.7NG081000.1.p 2 WIPFLQKKFLYALELLG--EAATPGKIKLIMNVNSIGRKQISAHLQKH 47 9999**********4..67***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	1.0E-10	2	48	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.6E-8	2	51	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MWIPFLQKKF LYALELLGEA ATPGKIKLIM NVNSIGRKQI SAHLQKHLKK VEKELRNTDA 60 KKCKNDPEIH PTNISDEEMS WDETAGNTQE TQGKTMYEAM RGALQLGTVF DESQLPNDPF 120 GRQARKGEVD ITGDGYGRDD WTCDSYKPVA NGDAQAQVVK LVTYSDSEDG EAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG081000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825246.1	1e-103	two-component response regulator ORR29-like
TrEMBL	A0A2T8IBS7	1e-101	A0A2T8IBS7_9POAL; Uncharacterized protein
STRING	Pavir.Gb02030.1.p	1e-128	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5920	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44190.1	4e-08	GOLDEN2-like 2

Link Out ? help Back to Top
Phytozome	Pavir.7NG081000.1.p