PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG088400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 767aa    MW: 89083.2 Da    PI: 6.5157
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG088400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.29.9e-17200279289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          f + Y++ +GF v k +++k+      +k tfvC+k+ k++e++++ +++rr+ a+++t+C+ k++vk+   ++wevt   +eHnH+l
  Pavir.7NG088400.1.p 200 FISVYGQVTGFAVIKGTNYKH------KKITFVCNKSRKARENDTR-QRKRRRDAVEHTQCRMKMTVKLV-ADRWEVTAAMNEHNHPL 279
                          6678***************99......5678***********9999.99*********************.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-14200279IPR004330FAR1 DNA binding domain
PfamPF105511.4E-26404496IPR018289MULE transposase domain
PROSITE profilePS509669.644684720IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-4695722IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MERGAESSPM LPAQTMIERN LKSYQEMSGA NRESGMGHGN ESANGESYGL VASPMNKVRE  60
AWKEADMSIV EMENTSRGDT DLEERYGIML APEHEVREHG NLTTQESLQS PIFLLNDTEI  120
NRQSEIQVPG AGETLKLGQE NGNVVLNEGD EDLNECQKDQ AEAEADGDED YMFPSPEEME  180
KARPPEVGMI FSTLQDAHRF ISVYGQVTGF AVIKGTNYKH KKITFVCNKS RKARENDTRQ  240
RKRRRDAVEH TQCRMKMTVK LVADRWEVTA AMNEHNHPLW CSPLLTRFFM SHKDMSDEER  300
HFSRILQESR IKPAKIMEIF RKLQGRFKNV RVRKVDVNNL KQSDRLMKTR NTDIGCTLEH  360
VRRLQKEQPG FYYTMKTDED CTIRSIFWTD ARARLGYALY GDFIHFNTTY RTIAYHMPFA  420
SLIGINGHGK PTVFGWALLE NGEVETFSWL FRTFLDVMDG KKPSIIITHQ DSAIQKSIAE  480
VFPTVFHRFS MWHVVKETAA EVGGFMVNRP GMEAELTRLI TNSLTTEEFE NGWKGMLEKY  540
TAELNEHLKH MYLTRSMWVP VYFKHVFFPF IRSFGHCEST HSIFKDYVLQ EDTIETFISQ  600
YNIFQEEAVS IDRFESTLQK PIYCTRQLIE RRAAEIYTMG LFSKFQKELL DASAFNVFEK  660
EKDRIYTVQR VVDYEDAEFP NDSFTIEVDM KNKTFNCICS KFERDGILCC HVLRLFTQFG  720
INEIPEHYIK QRWTKKFREQ ELQKLCIEKT GSTASQNSLR YAMLCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240244RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG088400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975158.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLA0A2T7CSB80.0A0A2T7CSB8_9POAL; Uncharacterized protein
STRINGPavir.J06737.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-78FAR1-related sequence 5