PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG095000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 259aa    MW: 28001.6 Da    PI: 9.1808
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG095000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY50.63.8e-162142512359
                          EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Pavir.7NG095000.1.p 214 GYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 251
                          7*****988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1034735.23E-2811189IPR020846Major facilitator superfamily domain
Gene3DG3DSA:1.20.1250.201.6E-1722189No hitNo description
PROSITE profilePS5085015.6123258IPR020846Major facilitator superfamily domain
CDDcd061747.63E-1724192IPR020846Major facilitator superfamily domain
PfamPF000837.9E-1825188IPR005828Major facilitator, sugar transporter-like
SMARTSM007745.5E-11190252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-17213252IPR003657WRKY domain
PROSITE profilePS5081116.995214253IPR003657WRKY domain
PfamPF031064.1E-13214250IPR003657WRKY domain
SuperFamilySSF1182905.36E-13214251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0022857Molecular Functiontransmembrane transporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MARELKVLNA LDAAKTQWYH FTTIVIAGMG FFTDAYDLFS ISLVTKLLGR IYYFDPSSRT  60
PGTLPPNVSA AVNGVAFCGT LAGQLFFGWL GDKMGRKKVY GMTLMLMVIC CIASGLSFGS  120
RPTGIMATLC FFRFWLGFGI GDDYPLSATI MSEYANKRTR GAFIAAVFAM QGFGNLTGGI  180
VAIIISAAFK ARFDAPASRT TLPAPTVPQA DYAGYYKCSS VRGCPARKHV ERCVDDPSML  240
IVTYEGDHNH NRVVAQPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4j05_A3e-301819531203Phosphate transporter
4j05_B3e-301819531203Phosphate transporter
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHigh-affinity transporter for external inorganic phosphate. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG095000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366220.0BT036622.1 Zea mays full-length cDNA clone ZM_BFb0126K16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636813.11e-132probable inorganic phosphate transporter 1-4
RefseqXP_015636814.11e-132probable inorganic phosphate transporter 1-4
RefseqXP_015636815.11e-132probable inorganic phosphate transporter 1-4
RefseqXP_015636816.11e-132probable inorganic phosphate transporter 1-4
RefseqXP_015636817.11e-132probable inorganic phosphate transporter 1-4
SwissprotQ01MW81e-134PHT14_ORYSI; Probable inorganic phosphate transporter 1-4
TrEMBLA0A0E0KMZ31e-132A0A0E0KMZ3_ORYPU; Uncharacterized protein
TrEMBLA0A3L6PUC11e-132A0A3L6PUC1_PANMI; Uncharacterized protein
STRINGOPUNC04G03160.11e-133(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-20WRKY DNA-binding protein 39