PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG100600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 208aa    MW: 24264.5 Da    PI: 7.3868
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG100600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.53.8e-072355991
                 FAR1 59 rtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                         r+gC a +kvk++k ++ w+ +++e+ HnH+l p
  Pavir.7NG100600.1.p  2 RIGCLAYVKVKEDKkRNIWYFHHVEEAHNHKLEP 35
                         89**********9999***************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRIGCLAYVK VKEDKKRNIW YFHHVEEAHN HKLEPSPRMV RYMHAHKQRE AAWDDLFAIM  60
SRSGVPTQAA MNVMSELFGG RQNWPFIEKD VQNKKAEQAR EERDGDMDKL FQFFKECKEH  120
NEYFYWDVDF DTKTKVLQSI FWCHASQHAE YKDFGDVVTF DTTHKTNSKH MPLAMFVGCS  180
NNLKNVSVGH VCGLCLTRHN TEIADGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG100600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020397484.11e-128protein FAR1-RELATED SEQUENCE 4-like
STRINGPavir.Fb02178.1.p4e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-20FAR1-related sequence 5