PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG106900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 291aa    MW: 30620.6 Da    PI: 8.788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG106900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.4e-061436223
                         EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                          Cp Cg++F+  ++L++H+   H
  Pavir.7NG106900.1.p 14 ACPQCGEVFTKADSLENHQAIrH 36
                         6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002801336IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5981341IPR007087Zinc finger, C2H2
SuperFamilySSF563994.03E-1038120No hitNo description
Gene3DG3DSA:3.90.228.101.5E-540119IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.5E-5165233IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563994.03E-10165227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MILRRYPRPR ELCACPQCGE VFTKADSLEN HQAIRHAVSE LGPEDSGRNI VEIIFKSSWQ  60
KRDRPICHID RILKVHNAPR TVARFEAYRD AVRSRCRAAA ARAAADGNEL LRFHSAPLAC  120
ALGLSGATSL CAAADSSSRS SATDTASSSS AAGAGPSAAA ACCGVCTAIR HGFAPWVGAH  180
PLGVRTTASS GRAHDCGAAS SSSVQADSGG CRAMLVCRVI AGRVRRAART RPAAACTATS  240
RSSSWPTPGP SCRASSSSTV CLNLNYIECF LITSYTFCTT KEECRQDHVC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG106900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856071e-156BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822927.11e-115uncharacterized protein LOC112898841
TrEMBLA0A1E5V1Z41e-125A0A1E5V1Z4_9POAL; Uncharacterized protein
STRINGPavir.Ga02641.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-51C2H2-like zinc finger protein