PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG138700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 440aa    MW: 48107.3 Da    PI: 8.9709
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG138700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.82.7e-55121273117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+n
  Pavir.7NG138700.1.p  12 EEaRTRWLKPSEVYYILQNHERFPITYEAPKQPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEKN 101
                          5569************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p fqrrc+w+Le ++e+ivlv+y+ev
  Pavir.7NG138700.1.p 102 PCFQRRCFWMLEPAYEHIVLVQYREV 127
                          ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.4437133IPR005559CG-1 DNA-binding domain
SMARTSM010764.9E-6810128IPR005559CG-1 DNA-binding domain
PfamPF038594.7E-4713126IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSQSFDINVL REEARTRWLK PSEVYYILQN HERFPITYEA PKQPPSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEK NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RYYSSQLFDG PPESLSSLGY PHAIYGNQYL SSTSGTSEGS ESHQSYSNLS  180
SVTEVSSYSG NKEYNKDGGS LLSIPELGQT CLEQTTEVYR VDNGNSKNKS GLNVALKKID  240
EQLSLGDDDD DYIYTNQVQP LGFATNTEPT DKKDGDQIKQ IQPEGTEKGL GRNIAPYEKK  300
NRKRKQPAPP APGEAAPSSS SSAAAAAREE AAAAAIGGDG SSGSAAAAAA APTTGQAGGS  360
DGGARCSRLA LLLPRAEAAS STGADGGGLR RRGEQRLPWR RGGSRMDSGQ PLSRLIWSKR  420
AAPLFYRVAC STAVQLILR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298305KKNRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG138700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823459.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A3L6Q0I80.0A0A3L6Q0I8_PANMI; Calmodulin-binding transcription activator 4 isoform X1
STRINGPavir.Gb01963.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-54Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains