PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG181000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 517aa    MW: 56618.9 Da    PI: 5.1879
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG181000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3341.71.6e-104653352261
                          XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX..................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksn..................ksneqarrkkmsraQDgiLkYMlkemevcnaqGfv 73 
                          +lkkrmwkdq ll++l++r+ +  + +  +   ++++                   +++++rrk+m raQDg++++Mlk+me+cna+Gfv
  Pavir.7NG181000.1.p  65 DLKKRMWKDQLLLMKLEGRSGRDRGPHPGDGHHQQHQqpaqdqmlasasskdmeeSPENRYRRKAMLRAQDGVIRHMLKMMEACNARGFV 154
                          8******************998765555443333333788888999999999999999******************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS-- CS
                 EIN3  74 YgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfp 163
                          Yg + e g pv+g+sdsLr+WWk++v fdr+gp a+           +++  + ++ s  h l+++qD+tlgSLLsal+qhc+ppqr+fp
  Pavir.7NG181000.1.p 155 YGVVGEDGVPVSGSSDSLRGWWKDDVGFDRAGPLALLAG--------HQEPGSPMAASFLHGLHDIQDSTLGSLLSALIQHCEPPQRSFP 236
                          **********************************97644........4444445699********************************* PP

                          TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTT CS
                 EIN3 164 lekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnq 252
                          l++g++pPWWPtG+e wwg++g ++++qg+ppy+kphdlkkawk+s+L+avikh+sp+++++r+l++qsk+lq+kmsa++  ++++v+ q
  Pavir.7NG181000.1.p 237 LDRGLAPPWWPTGQEPWWGTQGeAQAHQGAPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQMRKLVWQSKRLQHKMSARDAETWSRVIAQ 326
                          **********************9999**************************************************************** PP

                          TTT-S--XX CS
                 EIN3 253 eekecatvs 261
                          ee++ ++ +
  Pavir.7NG181000.1.p 327 EEALDRHAQ 335
                          **9876433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.4E-11165328No hitNo description
Gene3DG3DSA:1.10.3180.104.9E-63203335IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167687.06E-56206330IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MENGEGIDYY QKPAAHAASR PTMDEEEARA KGKAGHPTAE PEPETSQEEF FSDSESGSES  60
IEIADLKKRM WKDQLLLMKL EGRSGRDRGP HPGDGHHQQH QQPAQDQMLA SASSKDMEES  120
PENRYRRKAM LRAQDGVIRH MLKMMEACNA RGFVYGVVGE DGVPVSGSSD SLRGWWKDDV  180
GFDRAGPLAL LAGHQEPGSP MAASFLHGLH DIQDSTLGSL LSALIQHCEP PQRSFPLDRG  240
LAPPWWPTGQ EPWWGTQGEA QAHQGAPPYR KPHDLKKAWK ISLLSAVIKH LSPRFDQMRK  300
LVWQSKRLQH KMSARDAETW SRVIAQEEAL DRHAQRALRI TPIEEEDDDG PDDAGGDSPL  360
AAAHVDKRKR QVGREGVGRG VGAGVDVGKA LLALPDIDCV PDADRSSIDE LMRLYYRCLQ  420
GPDDDGEHEV KGAVAVVGDD DGGQRQHGGG AAAEAAPQMA HHDDMLPHGL LQHGGGAPVH  480
EDDVLLRSLL GVADVVDMSD FPNNPIWQWG FTTDTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A5e-462073324128Protein ETHYLENE INSENSITIVE 3
4zds_B5e-462073324128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG181000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430830.0BT043083.1 Zea mays full-length cDNA clone ZM_BFc0091K23 mRNA, complete cds.
GenBankJX4699690.0JX469969.1 Zea mays subsp. mays clone UT3232 EIL-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823375.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X1
SwissprotQ9FJQ58e-87EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A2T8ICJ40.0A0A2T8ICJ4_9POAL; Uncharacterized protein
STRINGPavir.Gb01550.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.12e-86EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]