PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG181700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 218aa    MW: 24255.8 Da    PI: 8.0835
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG181700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.48.1e-2043102459
                          SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS
                 WRKY   4 gynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 
                          g+ WrKYGqK++k++++pr Y+rC+++   +C++ k v++ ++d p ++e+tY  eH+++
  Pavir.7NG181700.1.p  43 GHLWRKYGQKVIKDAPHPRLYFRCSYRedrHCQASKLVQQVTHDfPPLFEVTYMYEHTCN 102
                          789***********************99999*********99995789**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2030102IPR003657WRKY domain
SuperFamilySSF1182901.83E-1934103IPR003657WRKY domain
SMARTSM007747.4E-2640103IPR003657WRKY domain
PfamPF031061.2E-2043101IPR003657WRKY domain
PROSITE profilePS5081115.93943104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
SSSSNSTTGY GHSSPEPARR DGRKRSKDEH TWIKHTLTPY FHGHLWRKYG QKVIKDAPHP  60
RLYFRCSYRE DRHCQASKLV QQVTHDFPPL FEVTYMYEHT CNAAPVPTPG VEAEVEPPPA  120
SGGGLVLMFG SCSGGGHHHR DAGVQLQEAK RQQYHHRSPR PSLLTNPRDH SNNSQLHAFP  180
STLGDHVQFS GSSFSWNTDG SALDLQSMGI EVEGVTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-13431011168OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG181700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978045.12e-98probable WRKY transcription factor 48
TrEMBLA0A368RUM45e-97A0A368RUM4_SETIT; Uncharacterized protein
STRINGSi012735m3e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.17e-19WRKY DNA-binding protein 62