PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG190000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26555.5 Da    PI: 9.419
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG190000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.78.4e-251058250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         rien   rqvtfskRr g+lKKA+ELSvLCd+++ vi+fs++g +ye +
  Pavir.7NG190000.1.p 10 RIENPAHRQVTFSKRRMGLLKKANELSVLCDVDIGVIVFSPHGMMYELA 58
                         8*********************************************965 PP
2K-box43.71.2e-1577158484
                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                          ++g s  ++k +   qe+  L +eie Lq+ +R    e d++ +sl eL+ Le++Le  +++iRs+K++++ ++ie l++k 
  Pavir.7NG190000.1.p  77 TQGASRRKKKPQAIPQEVLALTREIELLQKGLRYNHSEsDINHMSLGELHFLESNLEIWVQNIRSQKMQIMSMEIEMLRNKV 158
                          6778889999*******************99996555439***************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.4E-26175IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.245161IPR002100Transcription factor, MADS-box
CDDcd002658.14E-34272No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-243859IPR002100Transcription factor, MADS-box
PfamPF014866.6E-1784158IPR002487Transcription factor, K-box
PROSITE profilePS5129710.67387210IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MARGKAQIRR IENPAHRQVT FSKRRMGLLK KANELSVLCD VDIGVIVFSP HGMMYELATN  60
GNMQVLIERY KTAFGETQGA SRRKKKPQAI PQEVLALTRE IELLQKGLRY NHSESDINHM  120
SLGELHFLES NLEIWVQNIR SQKMQIMSME IEMLRNKVGS ACSFLAPVTN SSLHIQETSS  180
VAPFSNVFQE DILQATNDIF QEKISEQNGI LNASGSVMVP QVRFQLNRGS NYYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186RRKKKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG190000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823445.11e-147MADS-box transcription factor 26-like isoform X2
SwissprotA2YQK94e-61MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G84e-61MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2T8ICF21e-146A0A2T8ICF2_9POAL; Uncharacterized protein
STRINGPavir.Ga01731.1.p8e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.19e-47AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]