PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG207900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

M-type_MADS

Protein Properties

Length: 176aa MW: 18058.6 Da PI: 11.6195

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG207900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.7	1.7e-09	82	106	27	51
HHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51 +S LCdae+a+i+fs+ g +yey+s Pavir.7NG207900.1.p 82 ISLLCDAEIALIVFSPAGMFYEYAS 106 8**********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.96E-7	81	110	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.9E-6	82	104	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.073	82	108	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MVAQPNPTPL AVLRLAIAPL PSDGEKRLAE ARVPAGSTAA GARARCRGTG AWSCGGSRTP 60 SAGRCPSPSA ARGSSRWPSS SISLLCDAEI ALIVFSPAGM FYEYASTSRV EPGSGDVRNQ 120 VTSGWAAAQH PPAAGMPTPG KTPCAAAALL CSSRGRRTGS LRPGRDRWRS MRSIL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG207900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184819	1e-47	KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Gb01687.1.p	1e-66	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.7NG207900.1.p