PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG220100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 256aa    MW: 26729.1 Da    PI: 4.6936
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG220100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.3e-08446541
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  Pavir.7NG220100.1.p  4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklagkHQRLP 46
                         6******99*********************6678888898877 PP
2zf-B_box28.53.1e-095788334
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                          ++C+ ++ek++ +fC +++ l+C+dC + +H
  Pavir.7NG220100.1.p 57 VPRCDVCQEKPAFIFCVEDRALFCRDCDEPIH 88
                         689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.826147IPR000315B-box-type zinc finger
CDDcd000213.44E-6347No hitNo description
PfamPF006439.2E-6447IPR000315B-box-type zinc finger
SMARTSM003362.7E-9447IPR000315B-box-type zinc finger
SMARTSM003361.1E-1455102IPR000315B-box-type zinc finger
PROSITE profilePS501198.58955102IPR000315B-box-type zinc finger
PfamPF006433.7E-75798IPR000315B-box-type zinc finger
CDDcd000219.94E-85888No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAG KHQRLPLGGG AGAGGDVPRC  60
DVCQEKPAFI FCVEDRALFC RDCDEPIHVP GTLSGNHQRY LATGIRVGFS SVCGAGAGAD  120
VLPPPKGSSK PAAAAGSAKA PASKPAQPQE VPSSPFLPPS GWAVEDLLQL SDYESSDKKD  180
SPLEFKELEW FADIDLFHGH APAKATTAEV PELLATPQPA SNAGFYKTSG ARQSKKPRVE  240
LPDDEDDFFV VPDLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.15780.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG220100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976063.11e-155B-box zinc finger protein 24
RefseqXP_025825692.11e-155B-box zinc finger protein 24-like isoform X1
TrEMBLA0A2S3I7Y71e-154A0A2S3I7Y7_9POAL; Uncharacterized protein
TrEMBLK3Y9J21e-154K3Y9J2_SETIT; Uncharacterized protein
STRINGPavir.Gb01406.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.12e-59DBB family protein