PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG225600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 384aa    MW: 41725.4 Da    PI: 6.5241
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG225600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.84.5e-2645114271
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                          W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+n+ k++kk + ++++ 
  Pavir.7NG225600.1.p  45 WVREETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNVLKEFKKARSHARSS 114
                          ****************************************************************998874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.43237101IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-438103IPR009057Homeodomain-like
SMARTSM007171.3E-541103IPR001005SANT/Myb domain
CDDcd122034.57E-2743108No hitNo description
PfamPF138378.0E-1844135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLLSGPASAP TPPLLLPESS GEDCVHDSSR AAAAGSAPKR RAETWVREET LCLIALRREM  60
DAHFNTSKSN KHLWEAISAR MRDQGFDRSP TMCTDKWRNV LKEFKKARSH ARSSGGGGAG  120
GNANAKMAYY KEIDDLLKRR GKASGGGGGG GCVGTGSGSG AGKSPTSNSK IESYLQFTTD  180
NGFEDANIPF GPVEANGTSI LSIDDRLEDD RHPLPLAAAD AVATNGVNPW NWRDTSTNGG  240
DNQGTFGGRV ILVKWGDYTK RIGIDGTSEA IKAAIKSAFG LRTRRALWLE DEDEIVRTLD  300
RDMPIGTYTL HLDDGNCVTI KLCDGSRMQT SEDKTFYTEE DFRDFLTRRG WTLLREYGGY  360
RNVDSLDDLR PGVIYQGLRS LGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-3739132186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.18110.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG225600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146488.10.0uncharacterized LOC100280076
SwissprotQ9FX531e-138TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A3L6GEX50.0A0A3L6GEX5_MAIZE; Trihelix transcription factor GT-1
STRINGPavir.Gb01230.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-127Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]