PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG225800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 331aa MW: 36434.8 Da PI: 7.9382

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG225800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.7	4.8e-26	29	115	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t.sessstcpyfdqle 86 W ++e+l+Li++rrem+ +++++k+ k+lWe++s+++r+ gf rsp++C++kw+nl k++kk++ +++++ + ++ +++y+++++ Pavir.7NG225800.1.p 29 WVREETLCLIALRREMDAHFNTSKSSKHLWEAISARIRDPGFDRSPTMCTDKWRNLLKEFKKVRSQARSGgAgGNTNAKMVYYKEID 115 *******************************************************************99953355667899999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-5	20	87	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.502	21	85	IPR017877	Myb-like domain
SMART	SM00717	3.4E-5	25	87	IPR001005	SANT/Myb domain
CDD	cd12203	1.25E-25	27	92	No hit	No description
Pfam	PF13837	7.3E-17	28	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
SSSGEDGGHD SSHAAAAAGL APKRRAETWV REETLCLIAL RREMDAHFNT SKSSKHLWEA 60 ISARIRDPGF DRSPTMCTDK WRNLLKEFKK VRSQARSGGA GGNTNAKMVY YKEIDDLLKR 120 HGKASSGCVG RDNVSGAGKS HTSNSKIEAY LDSHALLDVR VTRCVLNSTS EILTMQSFGF 180 GYKPTIFGFE DANIPFGPVE ANGRSILSID DRLEDERHQL PLTAADAVAT NGVNPWNWRD 240 TSTNGGDNRG TFGGRVILVK WGAYTKRIVI DGTSEAIKEA IKSAFGLRTR RAFWLEDEDE 300 VVLTLDRDTP IGTYTLHLDD GNCTMRFFTL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-35	23	113	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.1811	1e-121	callus\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG225800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961771	1e-129	EU961771.1 Zea mays clone 238170 DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146488.1	1e-159	uncharacterized LOC100280076
Swissprot	Q9FX53	4e-97	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	K7TUB3	1e-161	K7TUB3_MAIZE; Trihelix transcription factor GT-1
STRING	GRMZM2G047370_P01	1e-159	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	2e-99	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG225800.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]