PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG234400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 802aa    MW: 91264.5 Da    PI: 9.196
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG234400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.57e-2153138190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk +  +++wev  +eleHnH++
  Pavir.7NG234400.1.p  53 QFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKFNAsENHWEVVFVELEHNHPC 137
                          6****************99988..9999**************99887...8999****************999***************97 PP

                 FAR1  90 a 90 
                          +
  Pavir.7NG234400.1.p 138 N 138
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1953138IPR004330FAR1 DNA binding domain
PfamPF105512.8E-24262355IPR018289MULE transposase domain
PfamPF044341.0E-6532575IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.78543579IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MDTLQSDPYS RSSLQPYRDA SVSFENNNTV LDKHEVVSPR VGMTFETVDL AYQFYLEYGY  60
RAGFGVSKRT SHSVDGVKYR ATFVCYKGGI ARIKPGLKAR RRLVAKTGCK AMMVVKFNAS  120
ENHWEVVFVE LEHNHPCNPE MVRFMMCFKD LPDWQREHRP FNAKTRLNPK IHSGRGRPPN  180
QNKDFMVRSF SQSNYSIEGA GKAGKLRFAE GDVEALLVFF DKMQAQNSNF FYNWDMDDEG  240
RLKNVCWVDA RSRVAYQHFC DVICFDTVYL TYQFLIPLVA FLGINHHGQF VLLGCGLLGD  300
ESPETFAWLF KKWLKCMNDK APEAIITTHS RPVVKAVGEV FPNTRHRYNL WHIMKELPEM  360
SGRVEDKEAI SLRMKKVVYD TITSADFERE WVEMINQYNL HDNRWLTTLF EERAKWVPAY  420
VKDTFWAGIS TVRRSERLEA FFDGYITPET TIKTFIEQFD TAMKLRSDRE AYDDFRSFQQ  480
RPQVLSGLLF EEQFANVYTI NMFQKFQDQL KQLMNVNCTE VSRSGSIVTY TVTVIGKERK  540
FDYRVMYNSA EKEVWCICRS FQFKGILCSH ALAVLRQELV MLIPPKYILD RWRKDYKCPE  600
EPKETPISPN VAKATGKGTK PENVREDKVD NLYKHGHQYF ADIVEMGATD PDAMEYVLSV  660
MKEAKEKVRK FEESRKEKRP GESPVSAGKR GAKSSKPSTE DVGNATSAST PSTAAATTVT  720
VVSSAPMAAA PTMMAMAPAS AAVPPGMFLV PMHPHPMVFP AFAPAVPPSV APVAPPAAPA  780
TNVGDNTSNT SKKRKKRKGK N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1791795KKRKK
2791797KKRKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.165520.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG234400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825620.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2T8ICQ10.0A0A2T8ICQ1_9POAL; Uncharacterized protein
STRINGPavir.Gb01461.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-117FAR1-related sequence 6