PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG239300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 492aa    MW: 51635.1 Da    PI: 6.9336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG239300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-06334356123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp CgksF++   L  H+++H
  Pavir.7NG239300.1.p 334 HECPTCGKSFPTYQALGGHMSSH 356
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00667193IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-57195IPR007087Zinc finger, C2H2
SuperFamilySSF576679.45E-97293No hitNo description
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SuperFamilySSF576679.45E-9329356No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4331357IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002334356IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.762334361IPR007087Zinc finger, C2H2
PfamPF139121.9E-12334356IPR007087Zinc finger, C2H2
PROSITE patternPS000280336356IPR007087Zinc finger, C2H2
SMARTSM003550.092425447IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-10425448IPR007087Zinc finger, C2H2
PROSITE profilePS501578.683425447IPR007087Zinc finger, C2H2
PROSITE patternPS000280427447IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MNSRAYQFQL QAAEAAAAAS PVHAAGDDEP EPPTPKALLL ELQAQGTADA PPAPRQGSGV  60
APTGVGKAQA TKCPECPKWF VSEKAMFGHL RKHPERGYKG ATPPGTAVAG DKKPKKQVAR  120
KEVDVSAMNI TAAAATAGEK NPWGEAKLST KWPVTAKRGR ATFAPSGQRA PLDAGMQEDE  180
EAAMILLEMA SSSRSKTSET QQWSVHQVHA PDAISGHQML DVEQAMLLDH VSGNQAPPEP  240
EQIVQPEVVF ELSAESQTPA VKELTNLEIT TEAVLIVVPA NKSIAPSPGS RKAKKRQTAV  300
PDLEQTAASP APPEGADGKP AARRIPSPAS DKKHECPTCG KSFPTYQALG GHMSSHVKVK  360
TGARHDDLAA AQAMHNILSH RNQSAVSVVV ARASIGAAAA WGQDLHVQED VQPPAPTVAP  420
SAAPHVCTEC HMTFPSGQAL GGHKRKHWFP EKHQAKAAAP AEPAAPVPAP AARAFDLNEM  480
PEEGEGENDQ P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG239300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671251.11e-139uncharacterized protein LOC103648579
TrEMBLA0A3L6PZ770.0A0A3L6PZ77_PANMI; Uncharacterized protein
STRINGPavir.Gb01481.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-14C2H2 family protein