PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG261900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 196aa    MW: 20056.6 Da    PI: 8.7213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG261900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-2051100356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++ a+++++g+
  Pavir.7NG261900.1.p  51 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 100
                          9*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.7950107IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2250108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3150107IPR001471AP2/ERF domain
PfamPF008477.1E-145099IPR001471AP2/ERF domain
SMARTSM003801.1E-3450113IPR001471AP2/ERF domain
CDDcd000181.63E-2751109No hitNo description
PRINTSPR003671.6E-105162IPR001471AP2/ERF domain
PRINTSPR003671.6E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MCGGAIIADF VPAGARRPAS STVSASILSG DELAKEAPAS RAPAPGRKTA YRGIRRRPWG  60
RWAAEIRDPR KGARVWLGTY ATPEDAARAY DVAAREIRGA KAKLNFPPAV GAGGPPATKR  120
RRTKVPAAEE SSGSSFSPAA ALVGPPAVGG AEETLRDCMS GLEAFLGLPL EDADAAAGGG  180
ADDVEAWDAV DLMFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2151113669ATERF1
3gcc_A3e-2151113669ATERF1
5wx9_A1e-20511131578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.51270.0callus| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG261900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643978e-95BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808872.12e-87ethylene-responsive transcription factor ERF071-like
SwissprotO222593e-32ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A2S3HCV54e-86A0A2S3HCV5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EEX94e-86A0A2T7EEX9_9POAL; Uncharacterized protein
STRINGPavir.J05942.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-33ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]