PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG264500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 434aa    MW: 45410 Da    PI: 7.3821
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG264500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19355389135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pavir.7NG264500.1.p 355 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 389
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.76E-14346410No hitNo description
SMARTSM004011.8E-18349403IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.018349385IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15353387IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.66E-15354411No hitNo description
PROSITE patternPS003440355380IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17355389IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MLHQTLTPSS LPPSVSASSS PFLHASDAAT APPGGSSPSS PSVFPRGSTM PSLAHHHSPM  60
DDGRMGALKS NNGFPPEETA EDAAAAAAGA FVEKDGFSVE DLLDLEEFCE PDKESAEDVE  120
APPPAASAAA EVKSNEDSQP LSVVTYELPP PPPEIVDLPA HDVEELEWVS RIMDDSLSEL  180
PPQPQPSAAL VASMAARPPL AQQRRAPLVH DGAYRALPAA PGPLRTLTIC ALSTEALVPV  240
KAKRSKRTRG PGWSLSGASF LSDSASSSST TTTSSCSSSG SFSPFVLLDS VPFGGLELGE  300
GYYNHFLPAP PSKKSKHAGS KHKPKKRGRK PKHLPPNPSA AGAAAQQPAP GDRRCSHCGV  360
QKTPQWRAGP EGAKTLCNAC GVRYKSGRLL PEYRPACSPT FVSDIHSNSH RKVLEMRRKK  420
EPATAAAPAV ASF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.66340.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG264500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976389.10.0GATA transcription factor 6
TrEMBLK3Y7D50.0K3Y7D5_SETIT; Uncharacterized protein
STRINGPavir.Gb01182.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5