PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG265400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 262aa    MW: 29217.6 Da    PI: 5.2529
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG265400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.4e-2061114456
                          -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Pavir.7NG265400.1.p  61 KRRFTEEQIRSLESMFQAhHAKLEPREKAELARQLGLQPRQVAIWFQNKRARWR 114
                          458**************9899********************************9 PP
2HD-ZIP_I/II122.52.1e-3959152193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          e+krr+++eq+++LE++F++++ kLep++K+elar+Lglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e L++e+ +L++
  Pavir.7NG265400.1.p  59 ERKRRFTEEQIRSLESMFQAHHaKLEPREKAELARQLGLQPRQVAIWFQNKRARWRSKQLEHDYAALRDKFDALHARVEPLKQEKLALAA 148
                          69******************999******************************************************************* PP

          HD-ZIP_I/II  90 elke 93 
                          +l+e
  Pavir.7NG265400.1.p 149 QLQE 152
                          *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.47E-1849118IPR009057Homeodomain-like
PROSITE profilePS5007117.68655116IPR001356Homeobox domain
SMARTSM003892.1E-1958120IPR001356Homeobox domain
CDDcd000863.78E-1760117No hitNo description
PfamPF000463.4E-1761114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-2061123IPR009057Homeodomain-like
PRINTSPR000316.9E-78796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000316.9E-796112IPR000047Helix-turn-helix motif
PfamPF021832.4E-13116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDRPDRHQHQ FFMPLPVLQQ QQQQLCAPMM DEHEQASFLA GRAGGGGGGG GGGAAGRGER  60
KRRFTEEQIR SLESMFQAHH AKLEPREKAE LARQLGLQPR QVAIWFQNKR ARWRSKQLEH  120
DYAALRDKFD ALHARVEPLK QEKLALAAQL QELSERLRER EDHRAASGGV AATASSSCCN  180
GGEEEAEDDK RNVVLRCVDM EPPESCVLAG ACATPPADVS VESECDDHHR LDYDDGLFPE  240
SFCATPELWE PWPLVEWNAV A*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG265400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282500.0KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826405.11e-134homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK02e-92HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ52e-92HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A2S3I9151e-133A0A2S3I915_9POAL; Uncharacterized protein
STRINGPavir.Ga00670.1.p1e-133(Panicum virgatum)
STRINGPavir.J33909.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.25e-28homeobox 7