PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG270300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 330aa    MW: 35373.8 Da    PI: 6.8965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG270300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20140191256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Pavir.7NG270300.1.p 140 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPIEAARAYDRAAFRMRGA 191
                          8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32139199IPR001471AP2/ERF domain
PROSITE profilePS5103224.092140198IPR001471AP2/ERF domain
PfamPF008478.3E-15140190IPR001471AP2/ERF domain
CDDcd000185.17E-30140199No hitNo description
SuperFamilySSF541711.37E-22140199IPR016177DNA-binding domain
SMARTSM003802.6E-36140204IPR001471AP2/ERF domain
PRINTSPR003671.7E-13141152IPR001471AP2/ERF domain
PRINTSPR003671.7E-13180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDFDGFALDF IREHLLDGGC GGVPGDSTGV PDDVTFPMLQ TQPEFQSMST LFLPPLRQQG  60
YAHLTHEHEG AALAADAAAS RAQHHEVPAT VMIKFGSEPS SPVRPALTIT VPPSPYAWAK  120
SVVTAPVPAA AAAVDNDFRK YRGVRQRPWG KYAAEIRDPK RRGSRVWLGT YDTPIEAARA  180
YDRAAFRMRG AKAILNFPNE VGTREADLWA PPQPPSAATQ AAPANKRKRL QEERDVEVLA  240
VINKVVKIEM PSSSSTRSTS PSSMSTRETT ASASSTVTST TTEAAGAGAD WLPVTPSSGS  300
WDQYWEALLG GLPPLSPHPA MGFPQLTVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26139205470ATERF1
3gcc_A4e-26139205470ATERF1
5wx9_A1e-251402001474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG270300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275258e-90KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825916.11e-154ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6PS241e-154A0A3L6PS24_PANMI; Uncharacterized protein
STRINGPavir.J22470.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-32ERF family protein