PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG270600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 347aa    MW: 36855.6 Da    PI: 4.9441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG270600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-20154204356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Pavir.7NG270600.1.p 154 YRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 204
                          9*******.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.012153211IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22153212IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-32153212IPR001471AP2/ERF domain
SMARTSM003803.1E-36153217IPR001471AP2/ERF domain
PRINTSPR003671.8E-13154165IPR001471AP2/ERF domain
PfamPF008475.2E-14154203IPR001471AP2/ERF domain
CDDcd000182.57E-30154212No hitNo description
PRINTSPR003671.8E-13193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDFAADFDGF ALNFIREHLL SGDCGGIAAV DSPMVFDDVT FPELPPQPEF EPMSFLLPPQ  60
EQQHQVIMGT DLTHEYMGGA PAAPAVGEAA ALQEQEPVAP VIIKYGTERS SAVRKPLTIS  120
VPPSSYGWAA TASASAAAAA APAPAAVVED FRMYRGVRQR PWGKYAAEIR DPKRRGSRVW  180
LGTYDTPVEA ARAYDRAAFR MRGAKAILNF PNEVGTRGAD FWAPPPAPAT KAAAATSKRK  240
RKQLEDPDDV EVVAVVNKAV KVDAPWSSSP LVSSSISPSS MSTRETTASS TVTSTTSETG  300
AGAEWLPVTP SSGTCEQYWE ALLSGLPPLS PRSPIPTLGF PQLPVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-26152216468ATERF1
3gcc_A6e-26152216468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG270600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275251e-110KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826258.11e-124ethylene-responsive transcription factor 6-like
TrEMBLA0A3L6Q8791e-140A0A3L6Q879_PANMI; Uncharacterized protein
STRINGPavir.Gb00971.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-32ethylene responsive element binding factor 5