PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG271600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 160aa MW: 17991.7 Da PI: 8.2777

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG271600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.3	1.7e-25	66	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA++vGFsvr+ + +++ +g ++ ++f C keg+r+e++ + +++++ +++ tr+gC a+l++k+++++k++v+k+e+ H+H+ Pavir.7NG271600.1.p 66 EFYKCYAHHVGFSVRVGQGQHKAIDGVVMYKRFLCAKEGFRDEKNLEsgSKRKKYEKTITRCGCGAMLVIKRTENDKYMVIKFEEVHTHA 155 6****************************************9988656666779999***************************** PP FAR1 89 la 90 l+ Pavir.7NG271600.1.p 156 LV 157 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-23	66	157	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MARRLEFNDV QSDAESVAPI ILAQECTTPQ KSFSIPFCGS SYTPDCDDTM KPKIGMTFAD 60 VDSTKEFYKC YAHHVGFSVR VGQGQHKAID GVVMYKRFLC AKEGFRDEKN LESGSKRKKY 120 EKTITRCGCG AMLVIKRTEN DKYMVIKFEE VHTHALVTP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.35277	0.0	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG271600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640678.1	1e-58	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2T8I9G7	1e-47	A0A2T8I9G7_9POAL; Uncharacterized protein
TrEMBL	B9FHJ0	4e-45	B9FHJ0_ORYSJ; Uncharacterized protein
STRING	OMERI12G12740.1	6e-41	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15006	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-20	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG271600.1.p