PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG272900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 248aa    MW: 26204.1 Da    PI: 4.5231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG272900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-1860106252
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                           y+GVr +  +g+Wv+eIr+p++   + r++lg+f+ +e+Aa+a++aa+++
  Pavir.7NG272900.1.p  60 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDAAALA 106
                          69****998.**********843...6*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-2860116IPR001471AP2/ERF domain
PfamPF008478.1E-1260106IPR001471AP2/ERF domain
PROSITE profilePS5103219.25660115IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-1960115IPR016177DNA-binding domain
SMARTSM003805.8E-3260121IPR001471AP2/ERF domain
PRINTSPR003676.5E-106172IPR001471AP2/ERF domain
CDDcd000186.91E-176195No hitNo description
PRINTSPR003676.5E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEHEQVLPQV SSEACTCSDN SRSIASLDAA SPSSSDDSGS PGGGGNRGTK RPRRDLKHPT  60
YRGVRMRTWG KWVSEIREPR KKSRIWLGTF DNPEMAARAH DAAALAGRAA HLNFPELAHE  120
LPRAASAAPK DVQAAAALAA ATLAAAAPSP VVPSFDNSDD AAVADRAPDQ AVEQYEQAAP  180
PDFFGGIENA VPSCGGMGPD LAFLDVPDAP LDFGYMLSPL PPSYCGSPWG DIADELCFEE  240
PLLLWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-15571151172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.111092e-71stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG272900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278641e-105KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825378.11e-112ethylene-responsive transcription factor ERF039-like
TrEMBLA0A3L6PZN41e-112A0A3L6PZN4_PANMI; Uncharacterized protein
STRINGPavir.Gb01129.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-24ERF family protein