PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG279000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 562aa    MW: 60686.1 Da    PI: 9.0482
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG279000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.62e-26201612127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk..sgyWk.at 86 
                          p+GfrF+Pt  elv +yL +k+ +k++  ++++ e+d y+++P+ L +++++   +++wyf s+r+++y+ g+r++r t+  +g+Wk +t
  Pavir.7NG279000.1.p  20 PVGFRFKPTLRELVEFYLLPKLLDKPTVPNDAVIEADAYECHPEILTRRYEErgADDNWYFLSPRNRRYPGGDRPSRRTAdnRGRWKpST 109
                          89************************88879999************96554422566******************99655459****889 PP

                  NAM  87 gkdkevlsk..kgel.........vglkktLvfy..kgrapkgektdWvmheyr 127
                          g++k+  ++  +              + +tL++y  ++++++ +kt+W+mhe +
  Pavir.7NG279000.1.p 110 GQSKPGAKAnkG--PrknlsvgaiEFTENTLAYYvgEAKNENETKTKWLMHELT 161
                          999998887551..344556666578899*****5555777788********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-3018196IPR003441NAC domain
PROSITE profilePS5100534.41419196IPR003441NAC domain
PfamPF023652.4E-1620161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAGVVERPSG GGDDAEGNYP VGFRFKPTLR ELVEFYLLPK LLDKPTVPND AVIEADAYEC  60
HPEILTRRYE ERGADDNWYF LSPRNRRYPG GDRPSRRTAD NRGRWKPSTG QSKPGAKANK  120
GPRKNLSVGA IEFTENTLAY YVGEAKNENE TKTKWLMHEL TVPELDKEKA PESAAAEQPR  180
DNMLLNRYVM CRIYKSPLKK WREAEDEEGS TSSASAPACD EPAPTSLQPG PAPETVAETS  240
SARATSSKSA GKRQAVEQPS GHAANAPNKR ASSQRRMPVM PPGPPRPTTH ANGGGMRVPP  300
AGAGAAGYYH SVPGLPPLLQ WPPPPMYNSM QGPVQLQRPP LTYVPNGQRP PVLRLCPPHR  360
AAAAAAPNSV GRTVMMRPPN LAASQPNRPP PPFPRPPPGQ QLRSQQQMED MKAHEERVLW  420
QLLAELKSPR GSASFAGQQH VRPTASTQPA CFDESANLRH PAGAEAMVPR TQFPAPHNFY  480
PCSGFKQQQQ QSSSPAAIPA ATVPPGAAGP VNVEATPAAA DAPGKLSVPG DANEESAKGD  540
CYGYGNQLFE DFFADLAPLK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-151419410166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG279000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5423115e-34AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823986.10.0NAC domain-containing protein 22-like
TrEMBLA0A3L6Q9A20.0A0A3L6Q9A2_PANMI; Uncharacterized protein
STRINGPavir.Gb01143.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1936857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.14e-24NAC family protein