PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG288300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 409aa    MW: 43312.9 Da    PI: 9.6974
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG288300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.3e-15160191132
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                          C +Cg+t+Tp+WR+gp g+ tLCnaCG+  + 
  Pavir.7NG288300.1.p 160 CLQCGATETPQWRSGPMGSGTLCNACGVQLKA 191
                          89*************************98875 PP
2GATA33.46.3e-11235267335
                 GATA   3 nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          +Cg+++ p+W +gp g +tLCn+CG +yr  +l
  Pavir.7NG288300.1.p 235 HCGSSSPPQWWEGPMGRSTLCNSCGARYRQGRL 267
                          9****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.8E-13154204IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-13154201No hitNo description
PROSITE profilePS5011413.837154208IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-14158197IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.92E-10159202No hitNo description
PfamPF003203.8E-13160190IPR000679Zinc finger, GATA-type
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-4230281IPR000679Zinc finger, GATA-type
PfamPF003201.8E-8235267IPR000679Zinc finger, GATA-type
CDDcd002021.78E-8235288No hitNo description
Gene3DG3DSA:3.30.50.102.6E-7235265IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.6E-7235286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTIAPTCHPT PLAACSLPHP PPSRPQGVSR PAMATAPGLG PRTGRSAATM ATDDLAGGGR  60
EGEREGALGY ILSLPAAVLP LPVAVSCLDA TVPRRRAAAP PPRPAVLLWT FELPIPAPEE  120
PKSLPPTASA ATNPTEEARP PDPHTPAPAM ERPAKRARRC LQCGATETPQ WRSGPMGSGT  180
LCNACGVQLK AAGALREQVH RPPPVTVRTV AEPPPESSVS DSSPDCPIWE PGRLHCGSSS  240
PPQWWEGPMG RSTLCNSCGA RYRQGRLLPE YRPLASPTFE PSEHANRHSQ VLQLHRQWKG  300
HQKKQQRLPT EEPQPVYHPT GAPPCSGGGG LASSVGFVAG SARAHRRAGG APRPAREGAA  360
GRSRSRGGGG RLVVDEWWRD EAQPAGSGSR ERREEGNEKK WTHSCQPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG288300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9713654e-77EU971365.1 Zea mays clone 363036 basic proline-rich protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159164.12e-91uncharacterized protein LOC100304247
TrEMBLC0HE334e-90C0HE33_MAIZE; C2C2-GATA transcription factor
STRINGPavir.Gb00810.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-22GATA transcription factor 4