PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG291500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 372aa    MW: 36916.9 Da    PI: 8.842
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG291500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.1e-3973134263
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                          kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt GG+lrnvPvGgg+rknk+sss
  Pavir.7NG291500.1.p  73 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKRSSS 134
                          7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3169131IPR003851Zinc finger, Dof-type
PfamPF027013.3E-3375131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.96677131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDAAHWQQSL GLVKPMEEML MAASAGAAAN TSPGSNPNPP APSSVAGGGA LRAPAPPAVA  60
GAGSTERRAR PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTDGGSLRNV  120
PVGGGSRKNK RSSSSSASAS TSASVTSSSM ASTAGAASKN PKLAHEGAQD LNLAFPHHGG  180
LHAPEFAAFP SLESSNVCNS GGAMAGNGRG GGGGGAGPGV GAFSAMELLR SSGCYMPLQV  240
PMPMPGYYAA AGFALGEFRA PPPPPPPSQS VLGFSLDAHG PGPGAAAAGY GSSAGLPENA  300
GRLLFPFEDL KPPVSSGGGG VAAGASGGAG DGNSGHPQFD HNKEQGGGGP SAGHDTPGFW  360
NGMIGGSGAS W*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG291500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824130.0KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824657.11e-178dof zinc finger protein 1-like isoform X2
SwissprotQ9SXG81e-133DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBLA0A2S3IA671e-177A0A2S3IA67_9POAL; Uncharacterized protein
STRINGPavir.Gb01040.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.15e-42Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]